J3_9KN0_004

3D structure

PDB id

9KN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

9KN0|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN0|1|2|A|938
9KN0|1|2|U|939
9KN0|1|2|U|940
9KN0|1|2|C|941
*
9KN0|1|2|G|985
9KN0|1|2|G|986
9KN0|1|2|A|987
9KN0|1|2|C|988
9KN0|1|2|C|989
9KN0|1|2|A|990
9KN0|1|2|G|991
9KN0|1|2|A|992
9KN0|1|2|G|993
*
9KN0|1|2|C|1000
9KN0|1|2|A|1001
9KN0|1|2|U|1002
9KN0|1|2|U|1003
9KN0|1|2|U|1004

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein eS1

Chain N

Small ribosomal subunit protein uS15

Chain O

Small ribosomal subunit protein uS11

Chain a

Small ribosomal subunit protein eS26