J3_9KN0_005

3D structure

PDB id

9KN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

9KN0|1|2|C|1138, 9KN0|1|2|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN0|1|2|C|1094
9KN0|1|2|C|1095
9KN0|1|2|G|1096
*
9KN0|1|2|U|1136
9KN0|1|2|U|1137
9KN0|1|2|C|1138
9KN0|1|2|C|1139
9KN0|1|2|G|1140
*
9KN0|1|2|C|1147
9KN0|1|2|A|1148
9KN0|1|2|A|1149
9KN0|1|2|A|1150
9KN0|1|2|G|1151

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

Small ribosomal subunit protein uS2

Chain V

Small ribosomal subunit protein eS21

Chain W

Small ribosomal subunit protein uS8

Chain a

Small ribosomal subunit protein eS26

Chain b

Small ribosomal subunit protein eS27