J3_9KN5_011
3D structure
- PDB id
- 9KN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 9KN5|1|S2|G|1274, 9KN5|1|S2|G|1507, 9KN5|1|S2|U|1509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9KN5_011 not in the Motif Atlas
- Homologous match to J3_9PN5_038
- Geometric discrepancy: 0.1181
- The information below is about J3_9PN5_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_87797.4
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9KN5|1|S2|C|1272
9KN5|1|S2|C|1273
9KN5|1|S2|G|1274
9KN5|1|S2|G|1275
9KN5|1|S2|A|1276
9KN5|1|S2|C|1277
*
9KN5|1|S2|G|1320
9KN5|1|S2|G|1321
9KN5|1|S2|G|1322
9KN5|1|S2|U|1323
9KN5|1|S2|G|1324
*
9KN5|1|S2|U|1504
9KN5|1|S2|U|1505
9KN5|1|S2|A|1506
9KN5|1|S2|G|1507
9KN5|1|S2|A|1508
9KN5|1|S2|U|1509
9KN5|1|S2|G|1510
Current chains
- Chain S2
- Chains: S2
Nearby chains
- Chain 1A
- Eukaryotic translation initiation factor 1A, X-chromosomal
- Chain SK
- 40S ribosomal protein S10
- Chain Sd
- 40S ribosomal protein S29
- Chain sh
- Ubiquitin-40S ribosomal protein S27a
Coloring options: