J3_9KN6_003
3D structure
- PDB id
- 9KN6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAGAUCAAAACCAACC*GCGGCUUUG*CUAG
- Length
- 29 nucleotides
- Bulged bases
- 9KN6|1|S2|U|286
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KN6|1|S2|C|223
9KN6|1|S2|A|224
9KN6|1|S2|G|225
9KN6|1|S2|A|226
9KN6|1|S2|U|227
9KN6|1|S2|C|228
9KN6|1|S2|A|229
9KN6|1|S2|A|230
9KN6|1|S2|A|231
9KN6|1|S2|A|232
9KN6|1|S2|C|233
9KN6|1|S2|C|234
9KN6|1|S2|A|235
9KN6|1|S2|A|236
9KN6|1|S2|C|237
9KN6|1|S2|C|238
*
9KN6|1|S2|G|280
9KN6|1|S2|C|281
9KN6|1|S2|G|282
9KN6|1|S2|G|283
9KN6|1|S2|C|284
9KN6|1|S2|U|285
9KN6|1|S2|U|286
9KN6|1|S2|U|287
9KN6|1|S2|G|288
*
9KN6|1|S2|C|295
9KN6|1|S2|U|296
9KN6|1|S2|A|297
9KN6|1|S2|G|298
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- 40S ribosomal protein S11
Coloring options: