J3_9KN6_008

3D structure

PDB id

9KN6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

9KN6|1|S2|C|1138, 9KN6|1|S2|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN6|1|S2|C|1094
9KN6|1|S2|C|1095
9KN6|1|S2|G|1096
*
9KN6|1|S2|U|1136
9KN6|1|S2|U|1137
9KN6|1|S2|C|1138
9KN6|1|S2|C|1139
9KN6|1|S2|G|1140
*
9KN6|1|S2|C|1147
9KN6|1|S2|A|1148
9KN6|1|S2|A|1149
9KN6|1|S2|A|1150
9KN6|1|S2|G|1151

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS2

Chain SV

40S ribosomal protein S21

Chain SW

40S ribosomal protein S15a

Chain Sa

40S ribosomal protein S26

Chain Sb

40S ribosomal protein S27