J3_9KN6_010

3D structure

PDB id

9KN6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGUGGA*UAC*GGAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN6|1|S2|A|1223
9KN6|1|S2|G|1224
9KN6|1|S2|U|1225
9KN6|1|S2|G|1226
9KN6|1|S2|G|1227
9KN6|1|S2|A|1228
*
9KN6|1|S2|U|1530
9KN6|1|S2|A|1531
9KN6|1|S2|C|1532
*
9KN6|1|S2|G|1638
9KN6|1|S2|G|1639
9KN6|1|S2|A|1640
9KN6|1|S2|A|1641
9KN6|1|S2|U|1642
9KN6|1|S2|U|1643

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SQ

40S ribosomal protein S16

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19

Chain zz

Internal ribosome entry site; IRES