J3_9KN6_016

3D structure

PDB id

9KN6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9KN6|1|S2|U|1535, 9KN6|1|S2|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN6|1|S2|C|1532
9KN6|1|S2|A|1533
9KN6|1|S2|C|1534
9KN6|1|S2|U|1535
9KN6|1|S2|G|1536
*
9KN6|1|S2|C|1597
9KN6|1|S2|G|1598
9KN6|1|S2|U|1599
9KN6|1|S2|G|1600
9KN6|1|S2|A|1601
9KN6|1|S2|U|1602
9KN6|1|S2|G|1603
9KN6|1|S2|G|1604
*
9KN6|1|S2|C|1635
9KN6|1|S2|G|1636
9KN6|1|S2|A|1637
9KN6|1|S2|G|1638

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19

Chain SZ

40S ribosomal protein S25