J3_9KN6_017

3D structure

PDB id

9KN6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGGCGCAGCGGAAGCGUGC*GAGGUCG*CC

Length

29 nucleotides

Bulged bases

9KN6|1|zy|U|8, 9KN6|1|zy|G|15, 9KN6|1|zy|C|16, 9KN6|1|zy|G|17, 9KN6|1|zy|G|18, 9KN6|1|zy|A|19, 9KN6|1|zy|U|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN6|1|zy|G|7
9KN6|1|zy|U|8
9KN6|1|zy|G|9
9KN6|1|zy|G|10
9KN6|1|zy|C|11
9KN6|1|zy|G|12
9KN6|1|zy|C|13
9KN6|1|zy|A|14
9KN6|1|zy|G|15
9KN6|1|zy|C|16
9KN6|1|zy|G|17
9KN6|1|zy|G|18
9KN6|1|zy|A|19
9KN6|1|zy|A|20
9KN6|1|zy|G|21
9KN6|1|zy|C|22
9KN6|1|zy|G|23
9KN6|1|zy|U|24
9KN6|1|zy|G|25
9KN6|1|zy|C|26
*
9KN6|1|zy|G|42
9KN6|1|zy|A|43
9KN6|1|zy|G|44
9KN6|1|zy|G|45
9KN6|1|zy|U|46
9KN6|1|zy|C|47
9KN6|1|zy|G|48
*
9KN6|1|zy|C|64
9KN6|1|zy|C|65

Current chains

Chain zy

Initiator Met-tRNA-i

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SP

40S ribosomal protein S15