J3_9KZU_003
3D structure
- PDB id
- 9KZU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 9KZU|1|L5|U|354, 9KZU|1|L5|A|362, 9KZU|1|L8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KZU|1|L5|C|351
9KZU|1|L5|G|352
9KZU|1|L5|A|353
9KZU|1|L5|U|354
9KZU|1|L5|A|355
9KZU|1|L5|G|356
9KZU|1|L5|U|357
9KZU|1|L5|C|358
9KZU|1|L5|A|359
9KZU|1|L5|A|360
9KZU|1|L5|C|361
9KZU|1|L5|A|362
9KZU|1|L5|A|363
9KZU|1|L5|G|364
9KZU|1|L5|U|365
9KZU|1|L5|A|366
9KZU|1|L5|C|367
*
9KZU|1|L5|G|374
9KZU|1|L5|G|375
9KZU|1|L5|A|376
9KZU|1|L5|A|377
9KZU|1|L5|A|378
9KZU|1|L5|G|379
*
9KZU|1|L8|C|21
9KZU|1|L8|U|22
9KZU|1|L8|C|23
9KZU|1|L8|G|24
Current chains
- Chain L5
- 28S ribosomal RNA
- Chain L8
- 5.8S_ribosomal_RNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LY
- 60S ribosomal protein L26
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
- Chain zx
- nascent peptide
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