J3_9KZU_007

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9KZU|1|L5|G|959, 9KZU|1|L5|G|961, 9KZU|1|L5|G|965, 9KZU|1|L5|C|967, 9KZU|1|L5|C|968, 9KZU|1|L5|C|969, 9KZU|1|L5|G|970, 9KZU|1|L5|U|971, 9KZU|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|L5|C|712
9KZU|1|L5|C|713
*
9KZU|1|L5|G|955
9KZU|1|L5|A|956
9KZU|1|L5|G|957
9KZU|1|L5|G|958
9KZU|1|L5|G|959
9KZU|1|L5|A|960
9KZU|1|L5|G|961
9KZU|1|L5|C|962
9KZU|1|L5|G|963
9KZU|1|L5|A|964
9KZU|1|L5|G|965
9KZU|1|L5|A|966
9KZU|1|L5|C|967
9KZU|1|L5|C|968
9KZU|1|L5|C|969
9KZU|1|L5|G|970
9KZU|1|L5|U|971
9KZU|1|L5|C|972
9KZU|1|L5|G|973
9KZU|1|L5|C|974
9KZU|1|L5|C|975
9KZU|1|L5|G|976
*
9KZU|1|L5|C|1278
9KZU|1|L5|A|1279
9KZU|1|L5|C|1280
9KZU|1|L5|G|1281
9KZU|1|L5|G|1282
9KZU|1|L5|G|1283
9KZU|1|L5|G|1284

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32