J3_9KZU_008

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

9KZU|1|L5|A|1534, 9KZU|1|L5|G|1641, 9KZU|1|L5|A|1642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|L5|U|1531
9KZU|1|L5|G|1532
9KZU|1|L5|A|1533
9KZU|1|L5|A|1534
9KZU|1|L5|C|1535
9KZU|1|L5|U|1536
9KZU|1|L5|A|1537
*
9KZU|1|L5|U|1622
9KZU|1|L5|A|1623
9KZU|1|L5|G|1624
*
9KZU|1|L5|C|1640
9KZU|1|L5|G|1641
9KZU|1|L5|A|1642
9KZU|1|L5|A|1643

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39

Chain zx

nascent peptide