J3_9KZU_016

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAGAUG*CAGU*AGGGUGUAAAUCUC

Length

25 nucleotides

Bulged bases

9KZU|1|L5|C|2768, 9KZU|1|L5|U|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|L5|G|2549
9KZU|1|L5|G|2550
9KZU|1|L5|A|2551
9KZU|1|L5|G|2552
9KZU|1|L5|A|2553
9KZU|1|L5|U|2554
9KZU|1|L5|G|2555
*
9KZU|1|L5|C|2572
9KZU|1|L5|A|2573
9KZU|1|L5|G|2574
9KZU|1|L5|U|2575
*
9KZU|1|L5|A|2757
9KZU|1|L5|G|2758
9KZU|1|L5|G|2759
9KZU|1|L5|G|2760
9KZU|1|L5|U|2761
9KZU|1|L5|G|2762
9KZU|1|L5|U|2763
9KZU|1|L5|A|2764
9KZU|1|L5|A|2765
9KZU|1|L5|A|2766
9KZU|1|L5|U|2767
9KZU|1|L5|C|2768
9KZU|1|L5|U|2769
9KZU|1|L5|C|2770

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LZ

60S ribosomal protein L27

Chain Lg

60S ribosomal protein L34