Loop J3_9KZU

3D structure

PDB id: 9KZU (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å

Loop

Sequence: UCGGUUG*CCUUCGUCCUGG*CGUCACGCACCGCACGUUCGUG
Length: 41 nucleotides
Bulged bases: 9KZU|1|L5|C|4883, 9KZU|1|L5|A|4938, 9KZU|1|L5|C|4940, 9KZU|1|L5|A|4943, 9KZU|1|L5|C|4944, 9KZU|1|L5|U|4950
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9KZU|1|L5|U|4748
9KZU|1|L5|C|4749
9KZU|1|L5|G|4750
9KZU|1|L5|G|4751
9KZU|1|L5|U|4752
9KZU|1|L5|U|4753
9KZU|1|L5|G|4754
*
9KZU|1|L5|C|4879
9KZU|1|L5|C|4880
9KZU|1|L5|U|4881
9KZU|1|L5|U|4882
9KZU|1|L5|C|4883
9KZU|1|L5|G|4884
9KZU|1|L5|U|4885
9KZU|1|L5|C|4886
9KZU|1|L5|C|4887
9KZU|1|L5|U|4888
9KZU|1|L5|G|4889
9KZU|1|L5|G|4890
*
9KZU|1|L5|C|4930
9KZU|1|L5|G|4931
9KZU|1|L5|U|4932
9KZU|1|L5|C|4933
9KZU|1|L5|A|4934
9KZU|1|L5|C|4935
9KZU|1|L5|G|4936
9KZU|1|L5|C|4937
9KZU|1|L5|A|4938
9KZU|1|L5|C|4939
9KZU|1|L5|C|4940
9KZU|1|L5|G|4941
9KZU|1|L5|C|4942
9KZU|1|L5|A|4943
9KZU|1|L5|C|4944
9KZU|1|L5|G|4945
9KZU|1|L5|U|4946
9KZU|1|L5|U|4947
9KZU|1|L5|C|4948
9KZU|1|L5|G|4949
9KZU|1|L5|U|4950
9KZU|1|L5|G|4951

Current chains

Chain L5: 28S ribosomal RNA

Nearby chains

Chain LE: 60S ribosomal protein L6
Chain LM: 60S ribosomal protein L14
Chain LO: 60S ribosomal protein L13a
Chain Lf: 60S ribosomal protein L35a

J3_9KZU_024