J3_9KZU_042

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9KZU|1|S2|U|1535, 9KZU|1|S2|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|S2|C|1532
9KZU|1|S2|A|1533
9KZU|1|S2|C|1534
9KZU|1|S2|U|1535
9KZU|1|S2|G|1536
*
9KZU|1|S2|C|1597
9KZU|1|S2|G|1598
9KZU|1|S2|U|1599
9KZU|1|S2|G|1600
9KZU|1|S2|A|1601
9KZU|1|S2|U|1602
9KZU|1|S2|G|1603
9KZU|1|S2|G|1604
*
9KZU|1|S2|C|1635
9KZU|1|S2|G|1636
9KZU|1|S2|A|1637
9KZU|1|S2|G|1638

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19

Chain SZ

40S ribosomal protein S25