J3_9KZU_043

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAU*AG*CCUUGUGG

Length

13 nucleotides

Bulged bases

9KZU|1|zz|U|281

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|zz|C|139
9KZU|1|zz|A|140
9KZU|1|zz|U|141
*
9KZU|1|zz|A|252
9KZU|1|zz|G|253
*
9KZU|1|zz|C|279
9KZU|1|zz|C|280
9KZU|1|zz|U|281
9KZU|1|zz|U|282
9KZU|1|zz|G|283
9KZU|1|zz|U|284
9KZU|1|zz|G|285
9KZU|1|zz|G|286

Current chains

Chain zz

HCV IRES

Nearby chains