J3_9LKV_001

3D structure

PDB id

9LKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 2'-dG-III riboswitch bound to 2'-dG

Experimental method

X-RAY DIFFRACTION

Resolution

2.13 Å

Loop

Sequence

AUAUC*GGCAAUACAUA*UUACU

Length

21 nucleotides

Bulged bases

9LKV|1|X|C|36

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9LKV_001 not in the Motif Atlas

Geometric match to J3_8KEB_001

Geometric discrepancy: 0.1311

The information below is about J3_8KEB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77951.1

Basepair signature

cWW-cWW-tSW-cHW-F-cWS-cWW-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9LKV|1|X|A|10
9LKV|1|X|U|11
9LKV|1|X|A|12
9LKV|1|X|U|13
9LKV|1|X|C|14
*
9LKV|1|X|G|34
9LKV|1|X|G|35
9LKV|1|X|C|36
9LKV|1|X|A|37
9LKV|1|X|A|38
9LKV|1|X|U|39
9LKV|1|X|A|40
9LKV|1|X|C|41
9LKV|1|X|A|42
9LKV|1|X|U|43
9LKV|1|X|A|44
*
9LKV|1|X|U|60
9LKV|1|X|U|61
9LKV|1|X|A|62
9LKV|1|X|C|63
9LKV|1|X|U|64

Current chains

Chain X

RNA (73-MER)

Nearby chains