J3_9MEE_005

3D structure

PDB id

9MEE (explore in PDB, NAKB, or RNA 3D Hub)

Description

GOLLD RNA nanocage (env-38)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAA*UGAAU*AA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MEE_005 not in the Motif Atlas

Geometric match to J3_4QK9_002

Geometric discrepancy: 0.1607

The information below is about J3_4QK9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_48248.1

Basepair signature

cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

9MEE|1|C|U|649
9MEE|1|C|A|650
9MEE|1|C|A|651
*
9MEE|1|C|U|663
9MEE|1|C|G|664
9MEE|1|C|A|665
9MEE|1|C|A|666
9MEE|1|C|U|667
*
9MEE|1|C|A|684
9MEE|1|C|A|685

Current chains

Chain C

GOLLD RNA nanocage

Nearby chains

Chain D

Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA

Chain M

Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA