J3_9MKK_014

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGGAUGC*GCGAAAAGAAC*GAGUGAAAAAGAACCUGAAAC

Length

40 nucleotides

Bulged bases

9MKK|1|a|A|504, 9MKK|1|a|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MKK|1|a|G|24
9MKK|1|a|U|25
9MKK|1|a|G|26
9MKK|1|a|G|27
9MKK|1|a|A|28
9MKK|1|a|U|29
9MKK|1|a|G|30
9MKK|1|a|C|31
*
9MKK|1|a|G|474
9MKK|1|a|C|475
9MKK|1|a|G|476
9MKK|1|a|A|477
9MKK|1|a|A|478
9MKK|1|a|A|479
9MKK|1|a|A|480
9MKK|1|a|G|481
9MKK|1|a|A|482
9MKK|1|a|A|483
9MKK|1|a|C|484
*
9MKK|1|a|G|496
9MKK|1|a|A|497
9MKK|1|a|G|498
9MKK|1|a|U|499
9MKK|1|a|G|500
9MKK|1|a|A|501
9MKK|1|a|A|502
9MKK|1|a|A|503
9MKK|1|a|A|504
9MKK|1|a|A|505
9MKK|1|a|G|506
9MKK|1|a|A|507
9MKK|1|a|A|508
9MKK|1|a|C|509
9MKK|1|a|C|510
9MKK|1|a|U|511
9MKK|1|a|G|512
9MKK|1|a|A|513
9MKK|1|a|A|514
9MKK|1|a|A|515
9MKK|1|a|C|516

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain t

50S ribosomal protein L24

Chain z

50S ribosomal protein L32