J3_9MKK_029

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

9MKK|1|a|U|2833, 9MKK|1|a|A|2835, 9MKK|1|a|U|2884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MKK|1|a|G|2812
9MKK|1|a|A|2813
9MKK|1|a|A|2814
9MKK|1|a|C|2815
*
9MKK|1|a|G|2831
9MKK|1|a|U|2832
9MKK|1|a|U|2833
9MKK|1|a|G|2834
9MKK|1|a|A|2835
9MKK|1|a|U|2836
*
9MKK|1|a|A|2882
9MKK|1|a|A|2883
9MKK|1|a|U|2884
9MKK|1|a|G|2885
9MKK|1|a|A|2886
9MKK|1|a|A|2887
9MKK|1|a|C|2888

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain m

Large ribosomal subunit protein bL17

Chain z

50S ribosomal protein L32