J3_9MNC_003

3D structure

PDB id

9MNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to small molecule SW393071

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUCG*CGAUAGUCAACAAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

9MNC|1|L1|C|23, 9MNC|1|L5|U|354, 9MNC|1|L5|A|362

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MNC_003 not in the Motif Atlas

Homologous match to J3_9H3G_003

Geometric discrepancy: 0.0751

The information below is about J3_9H3G_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.4

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

12

Unit IDs

9MNC|1|L1|C|21
9MNC|1|L1|U|22
9MNC|1|L1|C|23
9MNC|1|L1|G|24
*
9MNC|1|L5|C|351
9MNC|1|L5|G|352
9MNC|1|L5|A|353
9MNC|1|L5|U|354
9MNC|1|L5|A|355
9MNC|1|L5|G|356
9MNC|1|L5|U|357
9MNC|1|L5|C|358
9MNC|1|L5|A|359
9MNC|1|L5|A|360
9MNC|1|L5|C|361
9MNC|1|L5|A|362
9MNC|1|L5|A|363
9MNC|1|L5|G|364
9MNC|1|L5|U|365
9MNC|1|L5|A|366
9MNC|1|L5|C|367
*
9MNC|1|L5|G|374
9MNC|1|L5|G|375
9MNC|1|L5|A|376
9MNC|1|L5|A|377
9MNC|1|L5|A|378
9MNC|1|L5|G|379

Current chains

Chain L1

5.8S rRNA

Chain L5

28S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LE

Large ribosomal subunit protein uL24

Chain LP

Large ribosomal subunit protein eL37

Chain LU

Large ribosomal subunit protein eL39