J3_9MNC_016

3D structure

PDB id

9MNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to small molecule SW393071

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MNC|1|L5|A|2551
9MNC|1|L5|G|2552
9MNC|1|L5|A|2553
9MNC|1|L5|U|2554
9MNC|1|L5|G|2555
*
9MNC|1|L5|C|2572
9MNC|1|L5|A|2573
9MNC|1|L5|G|2574
9MNC|1|L5|U|2575
*
9MNC|1|L5|A|2757
9MNC|1|L5|G|2758
9MNC|1|L5|G|2759
9MNC|1|L5|G|2760
9MNC|1|L5|U|2761
9MNC|1|L5|G|2762
9MNC|1|L5|U|2763
9MNC|1|L5|A|2764
9MNC|1|L5|A|2765
9MNC|1|L5|A|2766
9MNC|1|L5|U|2767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LZ

Large ribosomal subunit protein eL27