J3_9MOR_023

3D structure

PDB id

9MOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MOR_023 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.2895

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

9MOR|1|2|C|936
9MOR|1|2|A|937
9MOR|1|2|A|938
9MOR|1|2|G|939
*
9MOR|1|2|C|1344
9MOR|1|2|U|1345
9MOR|1|2|A|1346
9MOR|1|2|G|1347
9MOR|1|2|U|1348
9MOR|1|2|A|1349
9MOR|1|2|A|1350
*
9MOR|1|2|U|1372
9MOR|1|2|G|1373
9MOR|1|2|A|1374
9MOR|1|2|A|1375
9MOR|1|2|U|1376
9MOR|1|2|A|1377
9MOR|1|2|C|1378
9MOR|1|2|G|1379

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain l

30S ribosomal protein S7

Chain n

Small ribosomal subunit protein uS9