J3_9MQ4_008

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MQ4_008 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.1769

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

9MQ4|1|1|G|1055
9MQ4|1|1|G|1056
9MQ4|1|1|A|1057
*
9MQ4|1|1|U|1081
9MQ4|1|1|U|1082
9MQ4|1|1|U|1083
9MQ4|1|1|A|1084
9MQ4|1|1|A|1085
9MQ4|1|1|A|1086
9MQ4|1|1|G|1087
*
9MQ4|1|1|C|1102
9MQ4|1|1|A|1103
9MQ4|1|1|C|1104

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L10

Chain I

50S ribosomal protein L11

Chain f

50S ribosomal protein L36