J3_9MTP_007

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

9MTP|1|1A|G|686, 9MTP|1|1A|G|792, 9MTP|1|1A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTP_007 not in the Motif Atlas

Geometric match to J3_9DFE_007

Geometric discrepancy: 0.0507

The information below is about J3_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9MTP|1|1A|C|683
9MTP|1|1A|G|684
9MTP|1|1A|A|685
9MTP|1|1A|G|686
9MTP|1|1A|C|687
9MTP|1|1A|U|688
9MTP|1|1A|A|689
*
9MTP|1|1A|U|773
9MTP|1|1A|A|774
9MTP|1|1A|G|775
*
9MTP|1|1A|C|791
9MTP|1|1A|G|792
9MTP|1|1A|A|793
9MTP|1|1A|G|794

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2