J3_9MTP_012

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTP_012 not in the Motif Atlas

Geometric match to J3_9DFE_013

Geometric discrepancy: 0.0561

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9MTP|1|1A|G|1424
9MTP|1|1A|G|1425
9MTP|1|1A|G|1426
9MTP|1|1A|A|1427
9MTP|1|1A|C|1428
9MTP|1|1A|G|1429
*
9MTP|1|1A|C|1564
9MTP|1|1A|C|1565
*
9MTP|1|1A|G|1568
9MTP|1|1A|A|1569
9MTP|1|1A|A|1570
9MTP|1|1A|A|1571
9MTP|1|1A|A|1572
9MTP|1|1A|G|1573
9MTP|1|1A|C|1574

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2