J3_9MTP_016

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

9MTP|1|1A|A|2518, 9MTP|1|1A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTP_016 not in the Motif Atlas

Geometric match to J3_9DFE_017

Geometric discrepancy: 0.046

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

9MTP|1|1A|C|2517
9MTP|1|1A|A|2518
9MTP|1|1A|U|2519
9MTP|1|1A|C|2520
*
9MTP|1|1A|G|2545
9MTP|1|1A|U|2546
9MTP|1|1A|U|2547
*
9MTP|1|1A|A|2561
9MTP|1|1A|U|2562
9MTP|1|1A|U|2563
9MTP|1|1A|A|2564
9MTP|1|1A|A|2565
9MTP|1|1A|A|2566
9MTP|1|1A|G|2567

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1N

50S ribosomal protein L13

Chain 1O

50S ribosomal protein L14