3D structure

PDB id
9MTP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
CGUCAG*CGCAACC*GACGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9MTP_032 not in the Motif Atlas
Geometric match to J3_4LFB_007
Geometric discrepancy: 0.0839
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

9MTP|1|1a|C|1063
9MTP|1|1a|G|1064
9MTP|1|1a|U|1065
9MTP|1|1a|C|1066
9MTP|1|1a|A|1067
9MTP|1|1a|G|1068
*
9MTP|1|1a|C|1107
9MTP|1|1a|G|1108
9MTP|1|1a|C|1109
9MTP|1|1a|A|1110
9MTP|1|1a|A|1111
9MTP|1|1a|C|1112
9MTP|1|1a|C|1113
*
9MTP|1|1a|G|1187
9MTP|1|1a|A|1188
9MTP|1|1a|C|1189
9MTP|1|1a|G|1190
9MTP|1|1a|A|1191
9MTP|1|1a|C|1192
9MTP|1|1a|G|1193

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1c
30S ribosomal protein S3
Chain 1e
30S ribosomal protein S5
Chain 1g
30S ribosomal protein S7
Chain 1i
30S ribosomal protein S9
Chain 1j
30S ribosomal protein S10
Chain 1n
30S ribosomal protein S14 type Z

Coloring options:


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