3D structure

PDB id
9MTP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
CGUAAG*CGG*UCAG
Length
13 nucleotides
Bulged bases
9MTP|1|2A|A|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9MTP_045 not in the Motif Atlas
Geometric match to J3_9DFE_010
Geometric discrepancy: 0.0591
The information below is about J3_9DFE_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32852.6
Basepair signature
cWW-tSH-F-F-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

9MTP|1|2A|C|1298
9MTP|1|2A|G|1299
9MTP|1|2A|U|1300
9MTP|1|2A|A|1301
9MTP|1|2A|A|1302
9MTP|1|2A|G|1303
*
9MTP|1|2A|C|1625
9MTP|1|2A|G|1626
9MTP|1|2A|G|1627
*
9MTP|1|2A|U|1639
9MTP|1|2A|C|1640
9MTP|1|2A|A|1641
9MTP|1|2A|G|1642

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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