J3_9MTP_050

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCC*GCCUAGUGAACC*GAUCAAC

Length

22 nucleotides

Bulged bases

9MTP|1|2A|A|2388, 9MTP|1|2A|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MTP|1|2A|G|2282
9MTP|1|2A|C|2283
9MTP|1|2A|C|2284
*
9MTP|1|2A|G|2384
9MTP|1|2A|C|2385
9MTP|1|2A|C|2386
9MTP|1|2A|U|2387
9MTP|1|2A|A|2388
9MTP|1|2A|G|2389
9MTP|1|2A|U|2390
9MTP|1|2A|G|2391
9MTP|1|2A|A|2392
9MTP|1|2A|A|2393
9MTP|1|2A|C|2394
9MTP|1|2A|C|2395
*
9MTP|1|2A|G|2421
9MTP|1|2A|A|2422
9MTP|1|2A|U|2423
9MTP|1|2A|C|2424
9MTP|1|2A|A|2425
9MTP|1|2A|A|2426
9MTP|1|2A|C|2427

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 21

50S ribosomal protein L28

Chain 26

50S ribosomal protein L33

Chain 28

50S ribosomal protein L35

Chain 2P

50S ribosomal protein L15