J3_9MTQ_006

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

9MTQ|1|1A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTQ_006 not in the Motif Atlas

Geometric match to J3_9DFE_006

Geometric discrepancy: 0.0399

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9MTQ|1|1A|C|297
9MTQ|1|1A|G|298
9MTQ|1|1A|A|299
9MTQ|1|1A|A|300
9MTQ|1|1A|G|301
*
9MTQ|1|1A|C|316
9MTQ|1|1A|G|317
9MTQ|1|1A|C|318
9MTQ|1|1A|C|319
9MTQ|1|1A|A|320
9MTQ|1|1A|G|321
9MTQ|1|1A|A|322
9MTQ|1|1A|G|323
9MTQ|1|1A|A|324
9MTQ|1|1A|G|325
*
9MTQ|1|1A|C|337
9MTQ|1|1A|G|338
9MTQ|1|1A|U|339
9MTQ|1|1A|A|340
9MTQ|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24