J3_9MTQ_009

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

9MTQ|1|1A|U|1082

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTQ_009 not in the Motif Atlas

Geometric match to J3_5J7L_040

Geometric discrepancy: 0.3117

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

9MTQ|1|1A|G|1055
9MTQ|1|1A|G|1056
9MTQ|1|1A|A|1057
*
9MTQ|1|1A|U|1081
9MTQ|1|1A|U|1082
9MTQ|1|1A|U|1083
9MTQ|1|1A|A|1084
9MTQ|1|1A|A|1085
9MTQ|1|1A|A|1086
9MTQ|1|1A|G|1087
*
9MTQ|1|1A|C|1102
9MTQ|1|1A|A|1103
9MTQ|1|1A|C|1104

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36