J3_9MTR_039

3D structure

PDB id

9MTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGS-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

9MTR|1|2A|U|448, 9MTR|1|2A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTR_039 not in the Motif Atlas

Geometric match to J3_9DFE_003

Geometric discrepancy: 0.0699

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

9MTR|1|2A|C|32
9MTR|1|2A|U|33
9MTR|1|2A|C|34
9MTR|1|2A|G|35
*
9MTR|1|2A|C|445
9MTR|1|2A|G|446
9MTR|1|2A|A|447
9MTR|1|2A|U|448
9MTR|1|2A|A|449
9MTR|1|2A|G|450
9MTR|1|2A|C|451
9MTR|1|2A|G|452
9MTR|1|2A|C|453
9MTR|1|2A|A|454
9MTR|1|2A|C|455
9MTR|1|2A|C|456
9MTR|1|2A|A|457
9MTR|1|2A|G|458
9MTR|1|2A|U|459
9MTR|1|2A|A|460
9MTR|1|2A|C|461
*
9MTR|1|2A|G|468
9MTR|1|2A|G|469
9MTR|1|2A|A|470
9MTR|1|2A|A|471
9MTR|1|2A|A|472
9MTR|1|2A|G|473

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2F

50S ribosomal protein L4

Chain 2U

50S ribosomal protein L20

Chain 2X

50S ribosomal protein L23