J3_9MTR_063

3D structure

PDB id

9MTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGS-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

9MTR|1|2a|A|975, 9MTR|1|2a|G|976, 9MTR|1|2a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTR_063 not in the Motif Atlas

Geometric match to J3_4LFB_004

Geometric discrepancy: 0.0669

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.1

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9MTR|1|2a|U|955
9MTR|1|2a|U|956
9MTR|1|2a|U|957
9MTR|1|2a|A|958
9MTR|1|2a|A|959
9MTR|1|2a|U|960
9MTR|1|2a|U|961
9MTR|1|2a|C|962
*
9MTR|1|2a|G|973
9MTR|1|2a|A|974
9MTR|1|2a|A|975
9MTR|1|2a|G|976
9MTR|1|2a|A|977
9MTR|1|2a|A|978
9MTR|1|2a|C|979
9MTR|1|2a|C|980
9MTR|1|2a|U|981
9MTR|1|2a|U|982
9MTR|1|2a|A|983
9MTR|1|2a|C|984
*
9MTR|1|2a|G|1221
9MTR|1|2a|G|1222
9MTR|1|2a|C|1223
9MTR|1|2a|G|1224
9MTR|1|2a|A|1225

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19

Chain 2w

Peptide chain release factor 1