J3_9MTS_005

3D structure

PDB id

9MTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

9MTS|1|1A|U|272|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTS_005 not in the Motif Atlas

Geometric match to J3_9DFE_005

Geometric discrepancy: 0.0671

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9MTS|1|1A|U|269
9MTS|1|1A|A|270
9MTS|1|1A|A|271
9MTS|1|1A|A|271|||A
9MTS|1|1A|C|271|||B
*
9MTS|1|1A|G|271|||V
9MTS|1|1A|G|271|||W
9MTS|1|1A|G|271|||X
9MTS|1|1A|U|271|||Y
9MTS|1|1A|C|271|||Z
9MTS|1|1A|G|272
9MTS|1|1A|U|272|||A
9MTS|1|1A|G|272|||B
*
9MTS|1|1A|C|366
9MTS|1|1A|G|370

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1I

50S ribosomal protein L9