J3_9MTS_042

3D structure

PDB id

9MTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

9MTS|1|2A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTS_042 not in the Motif Atlas

Geometric match to J3_9DFE_006

Geometric discrepancy: 0.0656

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9MTS|1|2A|C|297
9MTS|1|2A|G|298
9MTS|1|2A|A|299
9MTS|1|2A|A|300
9MTS|1|2A|G|301
*
9MTS|1|2A|C|316
9MTS|1|2A|G|317
9MTS|1|2A|C|318
9MTS|1|2A|C|319
9MTS|1|2A|A|320
9MTS|1|2A|G|321
9MTS|1|2A|A|322
9MTS|1|2A|G|323
9MTS|1|2A|A|324
9MTS|1|2A|G|325
*
9MTS|1|2A|C|337
9MTS|1|2A|G|338
9MTS|1|2A|U|339
9MTS|1|2A|A|340
9MTS|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24