J3_9MTS_047

3D structure

PDB id

9MTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

9MTS|1|2A|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTS_047 not in the Motif Atlas

Geometric match to J3_9DFE_012

Geometric discrepancy: 0.077

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

9MTS|1|2A|G|1344
9MTS|1|2A|C|1345
9MTS|1|2A|G|1346
9MTS|1|2A|G|1347
9MTS|1|2A|G|1348
9MTS|1|2A|A|1349
9MTS|1|2A|C|1350
*
9MTS|1|2A|G|1381
9MTS|1|2A|G|1382
9MTS|1|2A|C|1383
9MTS|1|2A|A|1384
9MTS|1|2A|G|1385
*
9MTS|1|2A|C|1402
9MTS|1|2A|C|1403

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23