3D structure

PDB id
9MTS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CAUC*GUU*AUUAAAG
Length
14 nucleotides
Bulged bases
9MTS|1|2A|A|2518, 9MTS|1|2A|U|2519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9MTS_052 not in the Motif Atlas
Geometric match to J3_9DFE_017
Geometric discrepancy: 0.0716
The information below is about J3_9DFE_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.5
Basepair signature
cWW-tWH-cHW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

9MTS|1|2A|C|2517
9MTS|1|2A|A|2518
9MTS|1|2A|U|2519
9MTS|1|2A|C|2520
*
9MTS|1|2A|G|2545
9MTS|1|2A|U|2546
9MTS|1|2A|U|2547
*
9MTS|1|2A|A|2561
9MTS|1|2A|U|2562
9MTS|1|2A|U|2563
9MTS|1|2A|A|2564
9MTS|1|2A|A|2565
9MTS|1|2A|A|2566
9MTS|1|2A|G|2567

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2N
50S ribosomal protein L13
Chain 2O
50S ribosomal protein L14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3973 s
Application loaded.