J3_9MTT_006

3D structure

PDB id

9MTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site deacylated-tRNAcys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

9MTT|1|1A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTT_006 not in the Motif Atlas

Geometric match to J3_9DFE_006

Geometric discrepancy: 0.0469

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9MTT|1|1A|C|297
9MTT|1|1A|G|298
9MTT|1|1A|A|299
9MTT|1|1A|A|300
9MTT|1|1A|G|301
*
9MTT|1|1A|C|316
9MTT|1|1A|G|317
9MTT|1|1A|C|318
9MTT|1|1A|C|319
9MTT|1|1A|A|320
9MTT|1|1A|G|321
9MTT|1|1A|A|322
9MTT|1|1A|G|323
9MTT|1|1A|A|324
9MTT|1|1A|G|325
*
9MTT|1|1A|C|337
9MTT|1|1A|G|338
9MTT|1|1A|U|339
9MTT|1|1A|A|340
9MTT|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24