J3_9MTT_010

3D structure

PDB id

9MTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site deacylated-tRNAcys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

9MTT|1|1A|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTT_010 not in the Motif Atlas

Geometric match to J3_9DFE_010

Geometric discrepancy: 0.054

The information below is about J3_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9MTT|1|1A|C|1298
9MTT|1|1A|G|1299
9MTT|1|1A|U|1300
9MTT|1|1A|A|1301
9MTT|1|1A|A|1302
9MTT|1|1A|G|1303
*
9MTT|1|1A|C|1625
9MTT|1|1A|G|1626
9MTT|1|1A|G|1627
*
9MTT|1|1A|U|1639
9MTT|1|1A|C|1640
9MTT|1|1A|A|1641
9MTT|1|1A|G|1642

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains