J3_9MTT_040

3D structure

PDB id

9MTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site deacylated-tRNAcys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

9MTT|1|2A|U|448, 9MTT|1|2A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTT_040 not in the Motif Atlas

Geometric match to J3_9DFE_003

Geometric discrepancy: 0.078

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

9MTT|1|2A|C|32
9MTT|1|2A|U|33
9MTT|1|2A|C|34
9MTT|1|2A|G|35
*
9MTT|1|2A|C|445
9MTT|1|2A|G|446
9MTT|1|2A|A|447
9MTT|1|2A|U|448
9MTT|1|2A|A|449
9MTT|1|2A|G|450
9MTT|1|2A|C|451
9MTT|1|2A|G|452
9MTT|1|2A|C|453
9MTT|1|2A|A|454
9MTT|1|2A|C|455
9MTT|1|2A|C|456
9MTT|1|2A|A|457
9MTT|1|2A|G|458
9MTT|1|2A|U|459
9MTT|1|2A|A|460
9MTT|1|2A|C|461
*
9MTT|1|2A|G|468
9MTT|1|2A|G|469
9MTT|1|2A|A|470
9MTT|1|2A|A|471
9MTT|1|2A|A|472
9MTT|1|2A|G|473

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2F

50S ribosomal protein L4

Chain 2U

50S ribosomal protein L20

Chain 2X

50S ribosomal protein L23