J3_9MTT_047

3D structure

PDB id

9MTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site deacylated-tRNAcys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

9MTT|1|2A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTT_047 not in the Motif Atlas

Geometric match to J3_9DFE_011

Geometric discrepancy: 0.0753

The information below is about J3_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9MTT|1|2A|C|1306
9MTT|1|2A|A|1307
9MTT|1|2A|A|1308
9MTT|1|2A|G|1309
*
9MTT|1|2A|C|1605
9MTT|1|2A|G|1606
9MTT|1|2A|C|1607
9MTT|1|2A|A|1608
9MTT|1|2A|A|1609
9MTT|1|2A|A|1610
9MTT|1|2A|C|1611
*
9MTT|1|2A|G|1620
9MTT|1|2A|U|1621
9MTT|1|2A|G|1622

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34