J3_9MTT_064

3D structure

PDB id

9MTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site deacylated-tRNAcys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

9MTT|1|2a|A|975, 9MTT|1|2a|G|976, 9MTT|1|2a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTT_064 not in the Motif Atlas

Geometric match to J3_4LFB_004

Geometric discrepancy: 0.0824

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.1

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9MTT|1|2a|U|955
9MTT|1|2a|U|956
9MTT|1|2a|U|957
9MTT|1|2a|A|958
9MTT|1|2a|A|959
9MTT|1|2a|U|960
9MTT|1|2a|U|961
9MTT|1|2a|C|962
*
9MTT|1|2a|G|973
9MTT|1|2a|A|974
9MTT|1|2a|A|975
9MTT|1|2a|G|976
9MTT|1|2a|A|977
9MTT|1|2a|A|978
9MTT|1|2a|C|979
9MTT|1|2a|C|980
9MTT|1|2a|U|981
9MTT|1|2a|U|982
9MTT|1|2a|A|983
9MTT|1|2a|C|984
*
9MTT|1|2a|G|1221
9MTT|1|2a|G|1222
9MTT|1|2a|C|1223
9MTT|1|2a|G|1224
9MTT|1|2a|A|1225

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19

Chain 2w

Peptide chain release factor 1