J3_9MTT_065

3D structure

PDB id

9MTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site deacylated-tRNAcys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

9MTT|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTT_065 not in the Motif Atlas

Geometric match to J3_8B0X_008

Geometric discrepancy: 0.2054

The information below is about J3_8B0X_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9MTT|1|2a|C|990
9MTT|1|2a|U|991
9MTT|1|2a|U|992
9MTT|1|2a|G|993
*
9MTT|1|2a|C|1045
9MTT|1|2a|A|1046
9MTT|1|2a|G|1047
*
9MTT|1|2a|C|1210
9MTT|1|2a|U|1211
9MTT|1|2a|U|1212
9MTT|1|2a|A|1213
9MTT|1|2a|C|1214
9MTT|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z

Chain 2w

Peptide chain release factor 1