J3_9N2B_007

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9N2B_007 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0716

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

9N2B|1|16|C|936
9N2B|1|16|A|937
9N2B|1|16|A|938
9N2B|1|16|G|939
*
9N2B|1|16|C|1344
9N2B|1|16|U|1345
9N2B|1|16|A|1346
9N2B|1|16|G|1347
9N2B|1|16|U|1348
9N2B|1|16|A|1349
9N2B|1|16|A|1350
*
9N2B|1|16|U|1372
9N2B|1|16|G|1373
9N2B|1|16|A|1374
9N2B|1|16|A|1375
9N2B|1|16|U|1376
9N2B|1|16|A|1377
9N2B|1|16|C|1378
9N2B|1|16|G|1379

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SG

30S ribosomal protein S7

Chain SI

30S ribosomal protein S9