J3_9N2B_017

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

9N2B|1|16|U|1240, 9N2B|1|16|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9N2B_017 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1329

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

9N2B|1|16|C|1237
9N2B|1|16|A|1238
9N2B|1|16|A|1239
9N2B|1|16|U|1240
9N2B|1|16|G|1241
*
9N2B|1|16|C|1296
9N2B|1|16|G|1297
9N2B|1|16|U|1298
9N2B|1|16|A|1299
9N2B|1|16|G|1300
9N2B|1|16|U|1301
9N2B|1|16|C|1302
9N2B|1|16|C|1303
*
9N2B|1|16|G|1334
9N2B|1|16|U|1335
9N2B|1|16|C|1336
9N2B|1|16|G|1337

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SG

30S ribosomal protein S7

Chain SM

30S ribosomal protein S13