J3_9N2B_018

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9N2B_018 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.046

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

9N2B|1|23|G|30
9N2B|1|23|C|31
*
9N2B|1|23|G|474
9N2B|1|23|C|475
9N2B|1|23|G|476
9N2B|1|23|A|477
9N2B|1|23|A|478
9N2B|1|23|A|479
9N2B|1|23|A|480
9N2B|1|23|G|481
*
9N2B|1|23|C|509
9N2B|1|23|C|510

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LT

50S ribosomal protein L20

Chain LX

50S ribosomal protein L24