J3_9N2B_020

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

9N2B|1|23|U|34, 9N2B|1|23|U|448, 9N2B|1|23|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9N2B_020 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0577

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

9N2B|1|23|C|32
9N2B|1|23|C|33
9N2B|1|23|U|34
9N2B|1|23|G|35
*
9N2B|1|23|C|445
9N2B|1|23|G|446
9N2B|1|23|A|447
9N2B|1|23|U|448
9N2B|1|23|A|449
9N2B|1|23|G|450
9N2B|1|23|U|451
9N2B|1|23|G|452
9N2B|1|23|A|453
9N2B|1|23|A|454
9N2B|1|23|C|455
9N2B|1|23|C|456
9N2B|1|23|A|457
9N2B|1|23|G|458
9N2B|1|23|U|459
9N2B|1|23|A|460
9N2B|1|23|C|461
*
9N2B|1|23|G|468
9N2B|1|23|G|469
9N2B|1|23|A|470
9N2B|1|23|A|471
9N2B|1|23|A|472
9N2B|1|23|G|473

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LD

Large ribosomal subunit protein uL4

Chain LT

50S ribosomal protein L20

Chain LW

50S ribosomal protein L23

Chain Lh

50S ribosomal protein L34