J3_9N2B_029

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9N2B|1|23|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9N2B_029 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0566

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

9N2B|1|23|C|2091
9N2B|1|23|U|2092
9N2B|1|23|G|2093
*
9N2B|1|23|C|2196
9N2B|1|23|U|2197
9N2B|1|23|A|2198
9N2B|1|23|A|2199
9N2B|1|23|C|2200
*
9N2B|1|23|G|2223
9N2B|1|23|G|2224
9N2B|1|23|A|2225
9N2B|1|23|C|2226
9N2B|1|23|A|2227
9N2B|1|23|G|2228

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LB

50S ribosomal protein L2

Chain LI

50S ribosomal protein L9

Chain Lb

50S ribosomal protein L28