J3_9N2B_035
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 9N2B|1|23|U|2833, 9N2B|1|23|A|2835, 9N2B|1|23|U|2884
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9N2B_035 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1158
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
9N2B|1|23|G|2812
9N2B|1|23|A|2813
9N2B|1|23|A|2814
9N2B|1|23|C|2815
*
9N2B|1|23|G|2831
9N2B|1|23|U|2832
9N2B|1|23|U|2833
9N2B|1|23|G|2834
9N2B|1|23|A|2835
9N2B|1|23|U|2836
*
9N2B|1|23|A|2882
9N2B|1|23|A|2883
9N2B|1|23|U|2884
9N2B|1|23|G|2885
9N2B|1|23|A|2886
9N2B|1|23|A|2887
9N2B|1|23|C|2888
Current chains
- Chain 23
- 23S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain LC
- 50S ribosomal protein L3
- Chain LQ
- 50S ribosomal protein L17
- Chain LV
- Large ribosomal subunit protein uL22
- Chain Lf
- 50S ribosomal protein L32
Coloring options: