J3_9N2C_005
3D structure
- PDB id
- 9N2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 9N2C|1|16|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9N2C_005 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.0671
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9N2C|1|16|U|672
9N2C|1|16|A|673
*
9N2C|1|16|U|717
9N2C|1|16|A|718
9N2C|1|16|C|719
9N2C|1|16|C|720
9N2C|1|16|G|721
9N2C|1|16|G|722
9N2C|1|16|U|723
9N2C|1|16|G|724
9N2C|1|16|G|725
*
9N2C|1|16|C|732
9N2C|1|16|G|733
9N2C|1|16|G|734
Current chains
- Chain 16
- 16S ribosomal RNA (rRNA) from the rrnH operon
Nearby chains
- Chain SF
- 30S ribosomal protein S6
- Chain SK
- Small ribosomal subunit protein uS11
- Chain SO
- 30S ribosomal protein S15
- Chain SR
- 30S ribosomal protein S18
- Chain SU
- 30S ribosomal protein S21
- Chain mR
- Synthetic messenger RNA (mRNA) 60 bp in length
Coloring options: